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Running Payroll

Salary structures, statutory deductions, monthly deposits and year-end certificates.

Chapter 28 of 35Part 3 ยท Running the business6 min read
Please note. General information to help you understand the rules. It is not legal, tax or financial advice for your particular case, and laws and portal procedures change; we confirm the current position before acting on your matter.

Overview

Payroll turns employment terms into accurate monthly payments and statutory deductions: TDS on salary, provident fund and ESI contributions, and professional tax where it applies. Under the Labour Codes, the definition of "wages" affects how contributions and benefits are calculated. Have your salary structure reviewed against the current rules.

Who this is for

  • Employers running monthly payroll
  • Finance teams choosing payroll software or a provider

Step by step

  1. Design the salary structureDefine components and check them against the current definition of wages.
  2. Collect employee declarationsTax regime choice and investment declarations affect TDS.
  3. Process monthly payrollCalculate pay, deductions and employer contributions; pay salaries through the bank.
  4. Deposit and fileDeposit TDS, PF, ESI and professional tax by their due dates and file the related returns.
  5. Year-endIssue TDS certificates for salary and reconcile annual figures.

Documents you will need

  • Employee master data
  • Attendance and leave records
  • Tax declarations and proofs
  • Challans and return acknowledgements

The process

Deposits and returns are made on the Income Tax, EPFO, ESIC and State portals.

Authorities involved

  • Income Tax Department, EPFO, ESIC, State PT departments: Receive deductions and returns.

Common mistakes

  • Deducting TDS without considering the employeeโ€™s chosen regime.
  • Late PF or ESI deposits.
  • Delaying full and final settlement after exit.

Checklist

Ticks are saved in this browser only. See your full checklist.

Frequently asked questions

Is PF mandatory for every employee?

It depends on whether your establishment is covered and on the employeeโ€™s wages and status. Check the current EPFO rules.

Official sources

Tools: Income tax calculator